{
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  "Package": "pliman",
  "Title": "Tools for Plant Image Analysis",
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  "Authors@R": "person(\"Tiago\", \"Olivoto\", , \"tiagoolivoto@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-0241-9636\"))",
  "Description": "Tools for both single and batch image manipulation and\nanalysis (Olivoto, 2022 <doi:10.1111/2041-210X.13803>) and\nphytopathometry (Olivoto et al., 2022\n<doi:10.1007/S40858-021-00487-5>). The tools can be used for\nthe quantification of leaf area, object counting, extraction of\nimage indexes, shape measurement, object landmark\nidentification, and Elliptical Fourier Analysis of object\noutlines (Claude (2008) <doi:10.1007/978-0-387-77789-4>). The\npackage also provides a comprehensive pipeline for generating\nshapefiles with complex layouts and supports high-throughput\nphenotyping of RGB, multispectral, and hyperspectral\northomosaics. This functionality facilitates field phenotyping\nusing UAV- or satellite-based imagery.",
  "License": "GPL (>= 3)",
  "URL": "https://nepem-ufsc.github.io/pliman/,\nhttps://github.com/nepem-ufsc/pliman",
  "BugReports": "https://github.com/nepem-ufsc/pliman/issues",
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  "Repository": "https://nepem-ufsc.r-universe.dev",
  "Date/Publication": "2026-10-08 15:59:03 UTC",
  "RemoteUrl": "https://github.com/nepem-ufsc/pliman",
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  "Packaged": {
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  "Author": "Tiago Olivoto [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-0241-9636>)",
  "Maintainer": "Tiago Olivoto <tiagoolivoto@gmail.com>",
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    "get_biplot",
    "get_card_colors",
    "get_free_ram",
    "get_free_ram_cpp",
    "get_measures",
    "get_pliman_viewer",
    "get_uuid",
    "get_wd_here",
    "ggplot_color",
    "gpa",
    "image",
    "image_align",
    "image_align_stack",
    "image_alpha",
    "image_augment",
    "image_autocrop",
    "image_binary",
    "image_binary_dl",
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    "image_bwlabel",
    "image_canny_edge",
    "image_classify_dl",
    "image_closing",
    "image_color_labels",
    "image_combine",
    "image_contour_line",
    "image_contrast",
    "image_correction",
    "image_correction_pick",
    "image_create",
    "image_crop",
    "image_data",
    "image_depth_dl",
    "image_detect_dl",
    "image_detect_sahi",
    "image_detect_world",
    "image_dilate",
    "image_dimension",
    "image_embed_dl",
    "image_erode",
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    "image_export",
    "image_features_dl",
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    "image_fuse_multifocus",
    "image_generate_dl",
    "image_horizontal",
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    "image_remove_small",
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    "image_stitch",
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    "image_watershed",
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    "rgb_to_srgb",
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    "yolo_dataset_merge",
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    "yolo_dataset_split",
    "yolo_dataset_stats",
    "yolo_dataset_subset",
    "yolo_export",
    "yolo_fewshot_fit",
    "yolo_fewshot_predict",
    "yolo_plot",
    "yolo_results",
    "yolo_train"
  ],
  "_datasets": [
    {
      "name": "contours",
      "title": "Contour outlines from five leaves",
      "object": "contours",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "sub-.image",
      "title": "Subsetting method for 'image' objects",
      "topics": [
        "[.image"
      ]
    },
    {
      "page": "align_stack_cpp",
      "title": "Native C++ Sub-Pixel Image Stack Alignment (ECC Maximization)",
      "topics": [
        "align_stack_cpp"
      ]
    },
    {
      "page": "analyze_objects",
      "title": "Analyzes objects in an image",
      "topics": [
        "analyze_objects",
        "analyze_objects2",
        "analyze_objects_iter",
        "plot.anal_obj",
        "plot.anal_obj_ls"
      ]
    },
    {
      "page": "analyze_objects_minimal",
      "title": "Analyzes objects in an image",
      "topics": [
        "analyze_objects_minimal",
        "plot.anal_obj_ls_minimal",
        "plot.anal_obj_minimal"
      ]
    },
    {
      "page": "analyze_objects_shp",
      "title": "Analyzes objects using shapefiles",
      "topics": [
        "analyze_objects_shp"
      ]
    },
    {
      "page": "apply_fun_to_imgs",
      "title": "Apply a function to images",
      "topics": [
        "apply_fun_to_imgs"
      ]
    },
    {
      "page": "as.numeric.image",
      "title": "Coerce 'image' pixel values to numeric vector",
      "topics": [
        "as.numeric.image"
      ]
    },
    {
      "page": "as.raster.image",
      "title": "Convert 'image' to standard R raster matrix",
      "topics": [
        "as.raster.image"
      ]
    },
    {
      "page": "c.yolo_fewshot_model",
      "title": "Combine Few-Shot Models",
      "topics": [
        "c.yolo_fewshot_model"
      ]
    },
    {
      "page": "calibrate",
      "title": "Calibrates distances of landmarks",
      "topics": [
        "calibrate"
      ]
    },
    {
      "page": "ccc",
      "title": "Model performance statistics",
      "topics": [
        "ccc"
      ]
    },
    {
      "page": "clear_pliman_cache",
      "title": "Clear cached files created by pliman",
      "topics": [
        "clear_pliman_cache"
      ]
    },
    {
      "page": "colorchecker_ref",
      "title": "Standard ColorChecker Reference Chart",
      "topics": [
        "colorchecker_ref"
      ]
    },
    {
      "page": "contour",
      "title": "Extract object contours from a labeled image",
      "topics": [
        "contour"
      ]
    },
    {
      "page": "contours",
      "title": "Contour outlines from five leaves",
      "topics": [
        "contours"
      ]
    },
    {
      "page": "cpp_extract_raster",
      "title": "Fast C++ raster extraction engine without GDAL",
      "topics": [
        "cpp_extract_raster"
      ]
    },
    {
      "page": "custom_palette",
      "title": "Generate Custom Color Palette",
      "topics": [
        "custom_palette"
      ]
    },
    {
      "page": "dilate_cpp",
      "title": "Fast morphological dilation",
      "topics": [
        "dilate_cpp"
      ]
    },
    {
      "page": "dist_transform",
      "title": "Distance map transform",
      "topics": [
        "dist_transform"
      ]
    },
    {
      "page": "dl_extract_phenotypes",
      "title": "Extract Morphological, Spectral, and Texture Phenotypes from Deep Learning Predictions",
      "topics": [
        "dl_extract_phenotypes"
      ]
    },
    {
      "page": "efourier",
      "title": "Elliptical Fourier Analysis",
      "topics": [
        "efourier"
      ]
    },
    {
      "page": "efourier_coefs",
      "title": "Get Fourier coefficients",
      "topics": [
        "efourier_coefs"
      ]
    },
    {
      "page": "efourier_error",
      "title": "Erros between the original and reconstructed outline",
      "topics": [
        "efourier_error"
      ]
    },
    {
      "page": "efourier_inv",
      "title": "Inverse Elliptical Fourier Analysis",
      "topics": [
        "efourier_inv"
      ]
    },
    {
      "page": "efourier_norm",
      "title": "Normalized Fourier coefficients",
      "topics": [
        "efourier_norm"
      ]
    },
    {
      "page": "efourier_power",
      "title": "Power in Fourier Analysis",
      "topics": [
        "efourier_power"
      ]
    },
    {
      "page": "efourier_shape",
      "title": "Draw shapes based on Fourier coefficients",
      "topics": [
        "efourier_shape"
      ]
    },
    {
      "page": "ellipse",
      "title": "Confidence ellipse",
      "topics": [
        "ellipse"
      ]
    },
    {
      "page": "entropy",
      "title": "Compute Shannon Entropy",
      "topics": [
        "entropy"
      ]
    },
    {
      "page": "erode_cpp",
      "title": "Standard morphological erosion",
      "topics": [
        "erode_cpp"
      ]
    },
    {
      "page": "erode_external_cpp",
      "title": "Fast external erosion",
      "topics": [
        "erode_external_cpp"
      ]
    },
    {
      "page": "erosao_conservativa",
      "title": "Fast conservative erosion pipeline",
      "topics": [
        "erosao_conservativa"
      ]
    },
    {
      "page": "fill_holes_cpp",
      "title": "Fast internal hole filling (with optional maximum hole size and neck distance check)",
      "topics": [
        "fill_holes_cpp"
      ]
    },
    {
      "page": "focus_stack",
      "title": "Multi-Focus Image Alignment, Registration and Fusion (MFIF)",
      "topics": [
        "align_stack",
        "focus_stack",
        "fuse_multifocus",
        "image_align_stack",
        "image_focus_stack",
        "image_fuse_multifocus",
        "process_focus_stack"
      ]
    },
    {
      "page": "fuse_laplacian_cpp",
      "title": "Native C++ Extended Depth of Field (EDF) Focus Stacking via Modified Laplacian",
      "topics": [
        "fuse_laplacian_cpp"
      ]
    },
    {
      "page": "get_card_colors",
      "title": "Extract ColorChecker Palettes using Bilinear Homography and Negative Buffering",
      "topics": [
        "get_card_colors"
      ]
    },
    {
      "page": "get_free_ram",
      "title": "Get Available System Physical Memory (RAM)",
      "topics": [
        "get_free_ram"
      ]
    },
    {
      "page": "get_free_ram_cpp",
      "title": "Fast C++ retrieval of available system physical RAM in bytes (Windows, Linux, macOS)",
      "topics": [
        "get_free_ram_cpp"
      ]
    },
    {
      "page": "get_pliman_viewer",
      "title": "Get the value of the pliman_viewer option",
      "topics": [
        "get_pliman_viewer"
      ]
    },
    {
      "page": "get_uuid",
      "title": "Extract UUID from filenames",
      "topics": [
        "get_uuid"
      ]
    },
    {
      "page": "ggplot_color",
      "title": "ggplot2-like colors generation",
      "topics": [
        "ggplot_color"
      ]
    },
    {
      "page": "gpa",
      "title": "Generalized Procrustes Analysis",
      "topics": [
        "gpa"
      ]
    },
    {
      "page": "hist.image",
      "title": "Compute and Plot Histogram for an 'image' Object",
      "topics": [
        "hist.image"
      ]
    },
    {
      "page": "image",
      "title": "The 'image' class constructor and utilities",
      "topics": [
        "as_image",
        "image",
        "is_image"
      ]
    },
    {
      "page": "image_align",
      "title": "Aligns an 'image' object by hand",
      "topics": [
        "image_align"
      ]
    },
    {
      "page": "image_alpha",
      "title": "Add Alpha Layer to an RGB Image",
      "topics": [
        "image_alpha"
      ]
    },
    {
      "page": "image_augment",
      "title": "Augment Images",
      "topics": [
        "image_augment"
      ]
    },
    {
      "page": "image_binary",
      "title": "Creates a binary image",
      "topics": [
        "image_binary"
      ]
    },
    {
      "page": "image_binary_dl",
      "title": "Deep Learning Binary Mask Extraction",
      "topics": [
        "image_binary_dl"
      ]
    },
    {
      "page": "image_bwlabel",
      "title": "Label connected components in a binary image",
      "topics": [
        "image_bwlabel"
      ]
    },
    {
      "page": "image_canny_edge",
      "title": "Canny Edge Detector",
      "topics": [
        "image_canny_edge"
      ]
    },
    {
      "page": "image_classify_dl",
      "title": "Real-Time and Zero-Shot Image Classification",
      "topics": [
        "image_classify_dl"
      ]
    },
    {
      "page": "image_color_labels",
      "title": "Colorize Labeled Images",
      "topics": [
        "image_color_labels"
      ]
    },
    {
      "page": "image_combine",
      "title": "Combines images to a grid",
      "topics": [
        "image_combine"
      ]
    },
    {
      "page": "image_contour_line",
      "title": "Smooth Contour Line Detection",
      "topics": [
        "image_contour_line"
      ]
    },
    {
      "page": "image_correction",
      "title": "Correct Image Colors using a Color Checker",
      "topics": [
        "image_correction"
      ]
    },
    {
      "page": "image_correction_pick",
      "title": "Interactive Color Correction",
      "topics": [
        "image_correction_pick"
      ]
    },
    {
      "page": "image_create",
      "title": "Create an 'image' object of a given color",
      "topics": [
        "image_create"
      ]
    },
    {
      "page": "image_data",
      "title": "Extract raw or numeric image data array/matrix",
      "topics": [
        "image_data",
        "image_data.image"
      ]
    },
    {
      "page": "image_depth_dl",
      "title": "Estimate Relative 3D Depth with Depth Anything V2",
      "topics": [
        "image_depth_dl"
      ]
    },
    {
      "page": "image_detect_dl",
      "title": "Universal Object Detection with YOLO26",
      "topics": [
        "image_detect_dl"
      ]
    },
    {
      "page": "image_detect_sahi",
      "title": "Slicing Aided Hyper Inference (SAHI) for Object Detection",
      "topics": [
        "image_detect_sahi"
      ]
    },
    {
      "page": "image_detect_world",
      "title": "Open-Vocabulary Zero-Shot Object Detection with YOLO-World",
      "topics": [
        "image_detect_world"
      ]
    },
    {
      "page": "image_embed_dl",
      "title": "Extract Image Embeddings with OpenAI CLIP ViT-B/32",
      "topics": [
        "image_embed_dl"
      ]
    },
    {
      "page": "image_expand",
      "title": "Expands an image",
      "topics": [
        "image_expand"
      ]
    },
    {
      "page": "image_features_dl",
      "title": "Extract Foundation Features and Semantic Visualization with DINOv2",
      "topics": [
        "image_features_dl"
      ]
    },
    {
      "page": "image_generate_dl",
      "title": "Ultra-Fast Generative Image Synthesis with SD-Turbo / LCM",
      "topics": [
        "image_generate_dl"
      ]
    },
    {
      "page": "image_index",
      "title": "Image indexes",
      "topics": [
        "image_index",
        "plot.image_index"
      ]
    },
    {
      "page": "image_inpaint_dl",
      "title": "Generative AI Image Inpainting with SD-Turbo",
      "topics": [
        "image_inpaint_dl"
      ]
    },
    {
      "page": "image_label",
      "title": "Label Connected Components in a Binary Image",
      "topics": [
        "image_label"
      ]
    },
    {
      "page": "image_line_segment",
      "title": "Line Segment Detection in an Image",
      "topics": [
        "image_line_segment"
      ]
    },
    {
      "page": "image_pose_dl",
      "title": "Universal Human Pose Estimation with YOLO26",
      "topics": [
        "image_pose_dl"
      ]
    },
    {
      "page": "image_prepare",
      "title": "Prepare an image",
      "topics": [
        "image_prepare"
      ]
    },
    {
      "page": "image_remove_bg_dl",
      "title": "Deep Learning Background Removal (Transparent / RGBA)",
      "topics": [
        "image_remove_bg",
        "image_remove_bg_dl"
      ]
    },
    {
      "page": "image_remove_reflection",
      "title": "Remove Specular Light Reflections",
      "topics": [
        "image_remove_reflection"
      ]
    },
    {
      "page": "image_resize",
      "title": "Resize an image",
      "topics": [
        "image_resize"
      ]
    },
    {
      "page": "image_segment",
      "title": "Image segmentation",
      "topics": [
        "image_segment",
        "image_segment_iter"
      ]
    },
    {
      "page": "image_segment_dl",
      "title": "Deep Learning Semantic & Instance Segmentation, Object Detection, and Visual Exemplar Counting",
      "topics": [
        "image_segment_dl"
      ]
    },
    {
      "page": "image_segment_kmeans",
      "title": "Image segmentation using k-means clustering",
      "topics": [
        "image_segment_kmeans"
      ]
    },
    {
      "page": "image_segment_manual",
      "title": "Image segmentation by hand",
      "topics": [
        "image_segment_manual"
      ]
    },
    {
      "page": "image_segment_mask",
      "title": "Segment an 'image' object using a brush mask",
      "topics": [
        "image_segment_mask"
      ]
    },
    {
      "page": "image_segment_sahi",
      "title": "Slicing Aided Hyper Inference (SAHI) for Instance Segmentation",
      "topics": [
        "image_segment_sahi"
      ]
    },
    {
      "page": "image_shp",
      "title": "Construct a shape file from an image",
      "topics": [
        "image_shp"
      ]
    },
    {
      "page": "image_skeleton_mat",
      "title": "Medial Axis Tree (MAT) Topological Skeletonization",
      "topics": [
        "image_skeleton_mat"
      ]
    },
    {
      "page": "image_square",
      "title": "Squares an image",
      "topics": [
        "image_square"
      ]
    },
    {
      "page": "image_stardist_dl",
      "title": "Star-Convex Object Detection with StarDist",
      "topics": [
        "image_stardist_dl"
      ]
    },
    {
      "page": "image_stitch",
      "title": "Native Planar Image Stitching and Panorama",
      "topics": [
        "image_stitch"
      ]
    },
    {
      "page": "image_superres_dl",
      "title": "4x Super-Resolution with Real-ESRGAN Compact",
      "topics": [
        "image_superres_dl"
      ]
    },
    {
      "page": "image_thinning_guo_hall",
      "title": "Perform Guo-Hall thinning on a binary image or list of binary images",
      "topics": [
        "image_thinning_guo_hall"
      ]
    },
    {
      "page": "image_to_mat",
      "title": "Convert an image to a data.frame",
      "topics": [
        "image_to_mat"
      ]
    },
    {
      "page": "image_transpose",
      "title": "Transpose an Image",
      "topics": [
        "image_transpose",
        "t.image"
      ]
    },
    {
      "page": "image_view",
      "title": "Create an interactive map view of an image",
      "topics": [
        "image_view"
      ]
    },
    {
      "page": "image_watershed",
      "title": "Intelligent Morphological Watershed (Spanning Forest + Union-Find)",
      "topics": [
        "image_watershed"
      ]
    },
    {
      "page": "landmarks",
      "title": "Create image landmarks",
      "topics": [
        "landmarks"
      ]
    },
    {
      "page": "landmarks_add",
      "title": "Artificially inflates the number of landmarks",
      "topics": [
        "landmarks_add"
      ]
    },
    {
      "page": "landmarks_angle",
      "title": "Angles between landmarks",
      "topics": [
        "landmarks_angle"
      ]
    },
    {
      "page": "landmarks_dist",
      "title": "Distances between landmarks",
      "topics": [
        "landmarks_dist"
      ]
    },
    {
      "page": "landmarks_regradi",
      "title": "Pseudolandmarks with equally spaced angles",
      "topics": [
        "landmarks_regradi"
      ]
    },
    {
      "page": "leading_zeros",
      "title": "Add leading zeros to a numeric sequence",
      "topics": [
        "leading_zeros"
      ]
    },
    {
      "page": "line_on_halfplot",
      "title": "Extract mid‐lines from half‐plots",
      "topics": [
        "line_on_halfplot"
      ]
    },
    {
      "page": "list_cameras",
      "title": "List Connected Video Cameras",
      "topics": [
        "list_cameras"
      ]
    },
    {
      "page": "make_brush",
      "title": "Makes a brush",
      "topics": [
        "make_brush"
      ]
    },
    {
      "page": "make_mask",
      "title": "Makes a mask in an image",
      "topics": [
        "make_mask"
      ]
    },
    {
      "page": "mean.image",
      "title": "Mean method for 'image' objects",
      "topics": [
        "mean.image"
      ]
    },
    {
      "page": "measure_disease",
      "title": "Performs plant disease measurements",
      "topics": [
        "measure_disease",
        "measure_disease_iter"
      ]
    },
    {
      "page": "measure_disease_byl",
      "title": "Performs plant disease measurements by leaf",
      "topics": [
        "measure_disease_byl"
      ]
    },
    {
      "page": "measure_disease_shp",
      "title": "Measure disease using shapefiles",
      "topics": [
        "measure_disease_shp"
      ]
    },
    {
      "page": "measure_injury",
      "title": "Measures Injury in Images",
      "topics": [
        "measure_injury"
      ]
    },
    {
      "page": "model_to_int8",
      "title": "Convert Installed ONNX Models to 8-Bit Precision (INT8)",
      "topics": [
        "models_to_int8",
        "model_to_int8"
      ]
    },
    {
      "page": "mosaic_aggregate",
      "title": "SpatRaster aggregation",
      "topics": [
        "mosaic_aggregate"
      ]
    },
    {
      "page": "mosaic_analyze",
      "title": "Analyze a mosaic of remote sensing data",
      "topics": [
        "mosaic_analyze"
      ]
    },
    {
      "page": "mosaic_analyze_iter",
      "title": "Analyze mosaics iteratively",
      "topics": [
        "mosaic_analyze_iter"
      ]
    },
    {
      "page": "mosaic_chm",
      "title": "Calculate Canopy Height Model and Volume",
      "topics": [
        "mosaic_chm"
      ]
    },
    {
      "page": "mosaic_chm_extract",
      "title": "Extracts height metrics and plot quality from a Canopy Height Model (CHM)",
      "topics": [
        "mosaic_chm_extract"
      ]
    },
    {
      "page": "mosaic_chm_mask",
      "title": "Apply a height mask to CHM data",
      "topics": [
        "mosaic_chm_mask"
      ]
    },
    {
      "page": "mosaic_classify",
      "title": "Classify a Mosaic Based on Index Breaks",
      "topics": [
        "mosaic_classify"
      ]
    },
    {
      "page": "mosaic_clip",
      "title": "Clip Raster Mosaic by Polygons",
      "topics": [
        "mosaic_clip"
      ]
    },
    {
      "page": "mosaic_crop",
      "title": "Crop or Mask a Mosaic Raster",
      "topics": [
        "mosaic_crop"
      ]
    },
    {
      "page": "mosaic_draw",
      "title": "Drawing Lines or Polygons with Raster Information",
      "topics": [
        "mosaic_draw"
      ]
    },
    {
      "page": "mosaic_epsg",
      "title": "Determine EPSG Code for a Mosaic",
      "topics": [
        "mosaic_epsg"
      ]
    },
    {
      "page": "mosaic_extract",
      "title": "Extract Values from a Raster Mosaic Using a Shapefile",
      "topics": [
        "extract_cpp",
        "mosaic_extract"
      ]
    },
    {
      "page": "mosaic_hist",
      "title": "A wrapper around terra::hist()",
      "topics": [
        "mosaic_hist"
      ]
    },
    {
      "page": "mosaic_index",
      "title": "Mosaic Index",
      "topics": [
        "mosaic_index"
      ]
    },
    {
      "page": "mosaic_index2",
      "title": "Mosaic Index with GDAL",
      "topics": [
        "mosaic_index2"
      ]
    },
    {
      "page": "mosaic_input",
      "title": "Create and Export mosaics",
      "topics": [
        "mosaic_export",
        "mosaic_input"
      ]
    },
    {
      "page": "mosaic_interpolate",
      "title": "Mosaic interpolation",
      "topics": [
        "mosaic_interpolate"
      ]
    },
    {
      "page": "mosaic_lonlat2epsg",
      "title": "Project a Mosaic from Lon/Lat to EPSG-based CRS",
      "topics": [
        "mosaic_lonlat2epsg"
      ]
    },
    {
      "page": "mosaic_plot",
      "title": "A wrapper around terra::plot()",
      "topics": [
        "mosaic_plot"
      ]
    },
    {
      "page": "mosaic_plot_rgb",
      "title": "A wrapper around terra::plotRGB()",
      "topics": [
        "mosaic_plot_rgb"
      ]
    },
    {
      "page": "mosaic_prepare",
      "title": "Prepare a mosaic",
      "topics": [
        "mosaic_prepare"
      ]
    },
    {
      "page": "mosaic_project",
      "title": "Project a Mosaic to a New Coordinate Reference System (CRS)",
      "topics": [
        "mosaic_project"
      ]
    },
    {
      "page": "mosaic_resample",
      "title": "A wrapper around terra::resample()",
      "topics": [
        "mosaic_resample"
      ]
    },
    {
      "page": "mosaic_rotate",
      "title": "Rotate a mosaic image by specified angles",
      "topics": [
        "mosaic_rotate"
      ]
    },
    {
      "page": "mosaic_segment",
      "title": "Segment a mosaic",
      "topics": [
        "mosaic_segment"
      ]
    },
    {
      "page": "mosaic_segment_pick",
      "title": "Segments a mosaic interactively",
      "topics": [
        "mosaic_segment_pick"
      ]
    },
    {
      "page": "mosaic_to_pliman",
      "title": "Mosaic to pliman",
      "topics": [
        "mosaic_to_pliman"
      ]
    },
    {
      "page": "mosaic_to_rgb",
      "title": "Mosaic to RGB",
      "topics": [
        "mosaic_to_rgb"
      ]
    },
    {
      "page": "mosaic_vectorize",
      "title": "Vectorize a 'SpatRaster' mask to an 'sf' object",
      "topics": [
        "mosaic_vectorize"
      ]
    },
    {
      "page": "mosaic_view",
      "title": "Mosaic View",
      "topics": [
        "mosaic_view"
      ]
    },
    {
      "page": "object_bbox",
      "title": "Compute Bounding Boxes from Contours",
      "topics": [
        "object_bbox"
      ]
    },
    {
      "page": "object_edge",
      "title": "Object edges",
      "topics": [
        "object_edge"
      ]
    },
    {
      "page": "object_export",
      "title": "Export multiple objects from an image to multiple images",
      "topics": [
        "object_export"
      ]
    },
    {
      "page": "object_export_shp",
      "title": "Export multiple objects from an image to multiple images",
      "topics": [
        "object_export_shp"
      ]
    },
    {
      "page": "object_haralick",
      "title": "Compute Haralick texture features",
      "topics": [
        "object_haralick"
      ]
    },
    {
      "page": "object_label",
      "title": "Labels objects",
      "topics": [
        "object_label"
      ]
    },
    {
      "page": "object_map",
      "title": "Map Object Distances",
      "topics": [
        "object_map"
      ]
    },
    {
      "page": "object_mark",
      "title": "Mark Object Points",
      "topics": [
        "object_mark"
      ]
    },
    {
      "page": "object_rgb",
      "title": "Extract red, green and blue values from objects",
      "topics": [
        "object_rgb"
      ]
    },
    {
      "page": "object_scatter",
      "title": "Plot object thumbnails at (x, y) coordinates derived from image features",
      "topics": [
        "object_scatter"
      ]
    },
    {
      "page": "object_split",
      "title": "Splits objects from an image into multiple images",
      "topics": [
        "object_split"
      ]
    },
    {
      "page": "object_split_shp",
      "title": "Splits image objects based on a shape file",
      "topics": [
        "object_split_shp"
      ]
    },
    {
      "page": "object_to_color",
      "title": "Apply color to image objects",
      "topics": [
        "object_to_color"
      ]
    },
    {
      "page": "object_veins",
      "title": "Object veins detection and quantification",
      "topics": [
        "object_veins"
      ]
    },
    {
      "page": "onnx_install",
      "title": "Proprietary ONNX Runtime Installer for pliman",
      "topics": [
        "onnx_install",
        "pliman_install_onnx"
      ]
    },
    {
      "page": "onnx_quantize",
      "title": "Quantize ONNX Models to 8-Bit Precision (INT8)",
      "topics": [
        "onnx_quantize"
      ]
    },
    {
      "page": "Ops.image",
      "title": "Group generic Ops method for 'image' objects",
      "topics": [
        "Ops.image"
      ]
    },
    {
      "page": "order_quad_corners",
      "title": "Order Quadrilateral Corners Topologically",
      "topics": [
        "order_quad_corners"
      ]
    },
    {
      "page": "otsu",
      "title": "Calculate Otsu's threshold",
      "topics": [
        "otsu"
      ]
    },
    {
      "page": "palettes",
      "title": "Create image palettes",
      "topics": [
        "image_palette",
        "palettes"
      ]
    },
    {
      "page": "pipe",
      "title": "Forward-pipe operator",
      "topics": [
        "%>%",
        "pipe"
      ]
    },
    {
      "page": "pixel_index",
      "title": "Get the pixel indices for a given row of a binary image",
      "topics": [
        "pixel_index"
      ]
    },
    {
      "page": "pliman_available_models",
      "title": "List Available Pre-Trained Neural Models",
      "topics": [
        "pliman_available_models"
      ]
    },
    {
      "page": "pliman_clear_sessions",
      "title": "Clear Cached ONNX Runtime Sessions",
      "topics": [
        "pliman_clear_sessions"
      ]
    },
    {
      "page": "pliman_configure_dl",
      "title": "Configure Complete Deep Learning Environment for pliman (100% Native C++)",
      "topics": [
        "pliman_configure_dl"
      ]
    },
    {
      "page": "pliman_download_model",
      "title": "Download Pre-Trained Neural Models",
      "topics": [
        "pliman_download_model"
      ]
    },
    {
      "page": "pliman_download_onnx",
      "title": "Download Microsoft ONNX Runtime C++ Library Directly",
      "topics": [
        "pliman_download_onnx"
      ]
    },
    {
      "page": "pliman_gpu_info",
      "title": "GPU Information and DirectML Status in pliman",
      "topics": [
        "pliman_gpu_info"
      ]
    },
    {
      "page": "pliman_images",
      "title": "Sample images",
      "topics": [
        "pliman_images"
      ]
    },
    {
      "page": "pliman_indexes_ican_compute",
      "title": "List Computable Indexes Based on Available Bands",
      "topics": [
        "pliman_indexes_ican_compute"
      ]
    },
    {
      "page": "pliman_model_dir",
      "title": "Model Directory Management for pliman Deep Learning Models",
      "topics": [
        "pliman_model_dir"
      ]
    },
    {
      "page": "pliman_models_base_url",
      "title": "Get Base URL for Pre-Trained Neural Models",
      "topics": [
        "pliman_models_base_url"
      ]
    },
    {
      "page": "pliman_onnx_dir",
      "title": "Directory for ONNX Runtime C++ Shared Libraries",
      "topics": [
        "pliman_onnx_dir"
      ]
    },
    {
      "page": "pliman_onnx_lib_path",
      "title": "Locate ONNX Runtime C++ Shared Library",
      "topics": [
        "pliman_onnx_lib_path"
      ]
    },
    {
      "page": "pliman_viewer",
      "title": "Global option for controlling the viewer in pliman package",
      "topics": [
        "pliman_viewer"
      ]
    },
    {
      "page": "plot_bbox",
      "title": "Add Bounding Boxes to an Existing Plot",
      "topics": [
        "plot_bbox"
      ]
    },
    {
      "page": "plot_id",
      "title": "Generate plot IDs with different layouts",
      "topics": [
        "plot_id"
      ]
    },
    {
      "page": "plot_index",
      "title": "Plot an image index",
      "topics": [
        "plot_index"
      ]
    },
    {
      "page": "plot_index_shp",
      "title": "Plot rectangles colored by a quantitative attribute and overlay on an RGB image",
      "topics": [
        "plot_index_shp"
      ]
    },
    {
      "page": "plot_line_segment",
      "title": "Plot Detected Line Segments",
      "topics": [
        "plot_line_segment"
      ]
    },
    {
      "page": "plot_lw",
      "title": "Plot length and width lines on objects",
      "topics": [
        "plot_lw"
      ]
    },
    {
      "page": "plot_yolo_heatmap",
      "title": "Plot YOLO Feature Activation Heatmap",
      "topics": [
        "plot_yolo_heatmap"
      ]
    },
    {
      "page": "plot.image",
      "title": "Plot method for 'image' objects",
      "topics": [
        "plot.image"
      ]
    },
    {
      "page": "plot.image_shp",
      "title": "S3 method 'plot' for 'image_shp' objects",
      "topics": [
        "plot.image_shp"
      ]
    },
    {
      "page": "plot.root_analysis",
      "title": "Plot method for root_analysis objects",
      "topics": [
        "plot.root_analysis"
      ]
    },
    {
      "page": "plot.yolo_fewshot_model",
      "title": "Plot a Few-Shot Exemplar Model",
      "topics": [
        "plot.yolo_fewshot_model"
      ]
    },
    {
      "page": "plot.yolo_train",
      "title": "Plot Diagnostic Evaluations and Performance Curves for YOLO Models",
      "topics": [
        "plot.yolo_train"
      ]
    },
    {
      "page": "poly_apex_base_angle",
      "title": "Calculate the apex and base angles of an object",
      "topics": [
        "poly_apex_base_angle"
      ]
    },
    {
      "page": "poly_pcv",
      "title": "Compute Perimeter Complexity Value (PCV)",
      "topics": [
        "poly_pcv"
      ]
    },
    {
      "page": "poly_width_at",
      "title": "Width at a given height",
      "topics": [
        "poly_width_at"
      ]
    },
    {
      "page": "predict_binary_glm",
      "title": "Fast Binary Image Prediction from a Logistic Regression Model",
      "topics": [
        "predict_binary_glm"
      ]
    },
    {
      "page": "prepare_to_shp",
      "title": "Prepare images to analyze_objects_shp()",
      "topics": [
        "prepare_to_shp"
      ]
    },
    {
      "page": "print.image",
      "title": "Print method for 'image' objects",
      "topics": [
        "print.image"
      ]
    },
    {
      "page": "print.pliman_video_frames",
      "title": "Print method for pliman_video_frames",
      "topics": [
        "print.pliman_video_frames"
      ]
    },
    {
      "page": "print.root_analysis",
      "title": "Print method for root_analysis objects",
      "topics": [
        "print.root_analysis"
      ]
    },
    {
      "page": "print.yolo_train",
      "title": "Print YOLO Training Summary",
      "topics": [
        "print.yolo_train"
      ]
    },
    {
      "page": "random_color",
      "title": "Random built-in color names",
      "topics": [
        "random_color"
      ]
    },
    {
      "page": "remove_reflection_cpp",
      "title": "Grayscale Reflection Removal via Masked Median Inpainting",
      "topics": [
        "remove_reflection_cpp"
      ]
    },
    {
      "page": "rgb_image",
      "title": "Create an RGB Image from Red, Green, and Blue Channels",
      "topics": [
        "rgbImage",
        "rgb_image"
      ]
    },
    {
      "page": "root_analyze",
      "title": "Advanced Root System Phenotyping Architecture",
      "topics": [
        "root_analyze"
      ]
    },
    {
      "page": "sad",
      "title": "Produces Santandard Area Diagrams",
      "topics": [
        "sad"
      ]
    },
    {
      "page": "sentinel_to_tif",
      "title": "Convert Sentinel data to GeoTIFF format",
      "topics": [
        "sentinel_to_tif"
      ]
    },
    {
      "page": "separate_col",
      "title": "Turns a single character column into multiple columns.",
      "topics": [
        "separate_col"
      ]
    },
    {
      "page": "set_pliman_viewer",
      "title": "Set the value of the pliman_viewer option",
      "topics": [
        "set_pliman_viewer"
      ]
    },
    {
      "page": "shapefile_build",
      "title": "Build a shapefile from a mosaic raster",
      "topics": [
        "shapefile_build"
      ]
    },
    {
      "page": "shapefile_edit",
      "title": "Edit Features in a Shapefile",
      "topics": [
        "shapefile_edit"
      ]
    },
    {
      "page": "shapefile_interpolate",
      "title": "Interpolate values at specific points based on coordinates and a target variable",
      "topics": [
        "shapefile_interpolate"
      ]
    },
    {
      "page": "shapefile_measures",
      "title": "Extract geometric measures from a shapefile object",
      "topics": [
        "shapefile_measures"
      ]
    },
    {
      "page": "shapefile_operations",
      "title": "Spatial Operations on Shapefiles",
      "topics": [
        "shapefile_crosses",
        "shapefile_difference",
        "shapefile_intersection",
        "shapefile_operations",
        "shapefile_outside",
        "shapefile_overlaps",
        "shapefile_touches",
        "shapefile_union",
        "shapefile_within"
      ]
    },
    {
      "page": "shapefile_plot",
      "title": "A wrapper around terra::plot()",
      "topics": [
        "shapefile_plot"
      ]
    },
    {
      "page": "shapefile_surface",
      "title": "Generate a spatial surface plot based on interpolated values",
      "topics": [
        "shapefile_surface"
      ]
    },
    {
      "page": "shapefile_transform",
      "title": "Apply Affine Transformations to Spatial Grids",
      "topics": [
        "shapefile_transform"
      ]
    },
    {
      "page": "summary_index",
      "title": "Summary an object index",
      "topics": [
        "summary_index"
      ]
    },
    {
      "page": "Summary.image",
      "title": "Group generic Summary method for 'image' objects (min, max, range, sum, prod, any, all)",
      "topics": [
        "Summary.image"
      ]
    },
    {
      "page": "text_embed_dl",
      "title": "Extract Text Embeddings with OpenAI CLIP ViT-B/32",
      "topics": [
        "text_embed_dl"
      ]
    },
    {
      "page": "to_numeric",
      "title": "Convert 'image' between raw (0..255 uint8) and numeric (0..1 double)",
      "topics": [
        "to_numeric",
        "to_raw"
      ]
    },
    {
      "page": "utils_colorspace",
      "title": "Convert between colour spaces",
      "topics": [
        "rgb_to_hsb",
        "rgb_to_lab",
        "rgb_to_srgb",
        "utils_colorspace"
      ]
    },
    {
      "page": "utils_dpi",
      "title": "Utilities for image resolution",
      "topics": [
        "cm_to_dpi",
        "cm_to_pixels",
        "distance",
        "dpi",
        "dpi_to_cm",
        "npixels",
        "pixels_to_cm",
        "utils_dpi"
      ]
    },
    {
      "page": "utils_file",
      "title": "Utilities for file manipulation",
      "topics": [
        "file_dir",
        "file_extension",
        "file_name",
        "manipulate_files",
        "utils_file"
      ]
    },
    {
      "page": "utils_image",
      "title": "Import and export images",
      "topics": [
        "image_export",
        "image_import",
        "image_input",
        "image_pliman",
        "utils_image"
      ]
    },
    {
      "page": "utils_indexes",
      "title": "Utilities for image indexes",
      "topics": [
        "pliman_indexes",
        "pliman_indexes_eq",
        "pliman_indexes_hs",
        "pliman_indexes_me",
        "pliman_indexes_rgb",
        "utils_indexes"
      ]
    },
    {
      "page": "utils_measures",
      "title": "Utilities for object measures",
      "topics": [
        "get_measures",
        "plot_measures",
        "utils_measures"
      ]
    },
    {
      "page": "utils_neural",
      "title": "Deep Learning Background Removal & Salient Object Segmentation in pliman",
      "topics": [
        "utils_neural"
      ]
    },
    {
      "page": "utils_objects",
      "title": "Utilities for working with image objects",
      "topics": [
        "object_contour",
        "object_coord",
        "object_id",
        "object_isolate",
        "utils_objects"
      ]
    },
    {
      "page": "utils_pca",
      "title": "Utilities for Principal Component Axis analysis",
      "topics": [
        "get_biplot",
        "pca",
        "plot.pca",
        "utils_pca"
      ]
    },
    {
      "page": "utils_pick",
      "title": "Utilities for picking up points in an image",
      "topics": [
        "pick_coords",
        "pick_count",
        "pick_palette",
        "pick_rgb",
        "pick_rgb_area",
        "utils_pick"
      ]
    },
    {
      "page": "utils_polygon",
      "title": "Utilities for Polygons",
      "topics": [
        "conv_hull",
        "conv_hull_unified",
        "poly_align",
        "poly_angles",
        "poly_area",
        "poly_caliper",
        "poly_centdist",
        "poly_centdist_mass",
        "poly_center",
        "poly_check",
        "poly_circularity",
        "poly_circularity_haralick",
        "poly_circularity_norm",
        "poly_close",
        "poly_convexity",
        "poly_distpts",
        "poly_eccentricity",
        "poly_elongation",
        "poly_flip_x",
        "poly_flip_y",
        "poly_is_closed",
        "poly_jitter",
        "poly_limits",
        "poly_lw",
        "poly_mass",
        "poly_measures",
        "poly_perimeter",
        "poly_rotate",
        "poly_sample",
        "poly_sample_prop",
        "poly_slide",
        "poly_smooth",
        "poly_solidity",
        "poly_spline",
        "poly_unclose",
        "utils_polygon"
      ]
    },
    {
      "page": "utils_polygon_plot",
      "title": "Utilities for plotting polygons",
      "topics": [
        "plot_contour",
        "plot_ellipse",
        "plot_mass",
        "plot_polygon",
        "utils_polygon_plot"
      ]
    },
    {
      "page": "utils_rows_cols",
      "title": "Utilities for handling with rows and columns",
      "topics": [
        "column_to_rownames",
        "remove_rownames",
        "round_cols",
        "rownames_to_column",
        "utils_rows_cols"
      ]
    },
    {
      "page": "utils_shapefile",
      "title": "Import/export shapefiles.",
      "topics": [
        "shapefile_export",
        "shapefile_input",
        "shapefile_view",
        "utils_shapefile"
      ]
    },
    {
      "page": "utils_shapes",
      "title": "Utilities for drawing coordinates of known shapes",
      "topics": [
        "draw_circle",
        "draw_n_tagon",
        "draw_rectangle",
        "draw_square",
        "draw_trian_equi",
        "draw_trian_rect",
        "utils_shapes"
      ]
    },
    {
      "page": "utils_stats",
      "title": "These functions applies common statistics to a list of objects, returning a numeric vector.",
      "topics": [
        "max_list",
        "mean_list",
        "min_list",
        "sd_list",
        "utils_stats"
      ]
    },
    {
      "page": "utils_transform",
      "title": "Spatial transformations",
      "topics": [
        "image_autocrop",
        "image_blur",
        "image_closing",
        "image_contrast",
        "image_crop",
        "image_dilate",
        "image_dimension",
        "image_erode",
        "image_fill_hull",
        "image_filter",
        "image_horizontal",
        "image_hreflect",
        "image_opening",
        "image_remove_small",
        "image_rotate",
        "image_skeleton",
        "image_thinning",
        "image_trim",
        "image_vertical",
        "image_vreflect",
        "utils_transform"
      ]
    },
    {
      "page": "utils_wd",
      "title": "Set and get the Working Directory quicky",
      "topics": [
        "get_wd_here",
        "open_wd",
        "open_wd_here",
        "set_wd_here",
        "utils_wd"
      ]
    },
    {
      "page": "uuid",
      "title": "Generate Version 7 UUIDs or Random UUIDs",
      "topics": [
        "uuid"
      ]
    },
    {
      "page": "video_detect_dl",
      "title": "Real-Time Video Object Detection with YOLO (ONNX Runtime)",
      "topics": [
        "video_detect",
        "video_detect_dl"
      ]
    },
    {
      "page": "video_split",
      "title": "Split a video into image frames",
      "topics": [
        "video_split",
        "video_to_frames"
      ]
    },
    {
      "page": "view",
      "title": "Generic function for interactive viewing of images and spatial objects",
      "topics": [
        "view"
      ]
    },
    {
      "page": "view.image",
      "title": "Interactive viewer method for 'image' objects with Zoom In and Zoom Out",
      "topics": [
        "view.image"
      ]
    },
    {
      "page": "yolo_dataset_add_background",
      "title": "Add Negative Background Images to a YOLO Dataset",
      "topics": [
        "yolo_dataset_add_background"
      ]
    },
    {
      "page": "yolo_dataset_audit",
      "title": "Comprehensive YOLO Dataset Health Audit and Auto-Repair",
      "topics": [
        "yolo_dataset_audit",
        "yolo_dataset_health"
      ]
    },
    {
      "page": "yolo_dataset_augment",
      "title": "Offline Data Augmentation with Geometric Bounding Box & Polygon Transformations",
      "topics": [
        "yolo_dataset_aug",
        "yolo_dataset_augment"
      ]
    },
    {
      "page": "yolo_dataset_autolabel",
      "title": "Auto-Label an Entire Directory into a Production YOLO Dataset",
      "topics": [
        "yolo_dataset_autolabel"
      ]
    },
    {
      "page": "yolo_dataset_balance",
      "title": "Balance Class Distributions via Augmentation or Downsampling",
      "topics": [
        "yolo_dataset_balance"
      ]
    },
    {
      "page": "yolo_dataset_classify",
      "title": "Organize and Split Images into a YOLO Classification Dataset",
      "topics": [
        "yolo_dataset_classify",
        "yolo_dataset_cls"
      ]
    },
    {
      "page": "yolo_dataset_convert",
      "title": "Convert External Annotations (CSV, COCO, Pascal VOC) to YOLO Format",
      "topics": [
        "yolo_dataset_convert"
      ]
    },
    {
      "page": "yolo_dataset_export",
      "title": "Export Dataset in YOLO Format for Detection or Segmentation",
      "topics": [
        "yolo_dataset_export"
      ]
    },
    {
      "page": "yolo_dataset_filter",
      "title": "Filter or Subset Classes in a YOLO Dataset",
      "topics": [
        "yolo_dataset_filter",
        "yolo_dataset_subset"
      ]
    },
    {
      "page": "yolo_dataset_from_ndjson",
      "title": "Import an Ultralytics NDJSON Dataset and Export to YOLO Structure",
      "topics": [
        "yolo_dataset_from_ndjson",
        "yolo_dataset_import_ndjson"
      ]
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    {
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